The BS Mechanical Engineering Program of FEU Institute of Technology designed undergraduate thesis courses for its first batch of BSME students enrolled in the Project Study 1 and Project Study 2 courses. These courses were designed to be in line with governmental and institutional requirements, outcomes-based education, and optimized research output. The courses were successfully implemented and used as optimal venues for assessing program outcomes for accreditation purposes and the continuous quality improvement process of the BS-mechanical engineering program.